1. Dimonte S, Berrilli F, D'Orazi C, D'Alfonso R, Placco F, Bordi E, et al. Molecular analysis based on mtLSU-rRNA and DHPS sequences of Pneumocystis jirovecii from immunocompromised and immunocompetent patients in Italy. Infect Genet Evol. 2013; 14:68-72.
2. Schmoldt S, Schuhegger R, Wendler T, Huber I, Söllner H, Hogardt M, et al. Molecular evidence of nosocomial Pneumocystis jirovecii transmission among 16 patients after kidney transplantation. J Clin Microbiol. 2008; 46(3):966-71.
3. Morris A, Lundgren JD, Masur H, Walzer PD, Hanson DL, Frederick T, et al. Current epidemiology of Pneumocystis pneumonia. Emerg Infect Dis. 2004; 10(10):1713-20.
4. Burke BA, Good RA. Pneumocystis carinii infection. Medicine. 1973; 52(1):23-51.
5. Flori P, Bellete B, Durand F, Raberin H, Cazorla C, Hafid J, et al. Comparison between real-time PCR, conventional PCR and different staining techniques for diagnosing Pneumocystis jiroveci pneumonia from bronchoalveolar lavage specimens. J Med Microbiol. 2004; 53(7):603-7.
6. Fan LC, Lu HW, Cheng KB, Li HP, Xu JF. Evaluation of PCR in bronchoalveolar lavage fluid for diagnosis of Pneumocystis jirovecii pneumonia: a bivariate meta-analysis and systematic review. PloS One. 2013; 8(9):e73099.
7. Depypere M, Saegeman V, Lagrou K. Typing of Pneumocystis jirovecii by multilocus sequencing: evidence of outbreak? Eur J Clin Microbiol Infect Dis. 2016; 35(6):911-6.
8. Ripamonti C, Orenstein A, Kutty G, Huang L, Schuhegger R, Sing A, et al. Restriction fragment length polymorphism typing demonstrates substantial diversity among Pneumocystis jirovecii isolates. J Infect Dis. 2009; 200(10):1616-22.
9. Hauser PM, Blanc DS, Sudre P, Senggen Manoloff E, Nahimana A, Bille J, et al. Genetic diversity of Pneumocystis carinii in HIV-positive and-negative patients as revealed by PCR-SSCP typing. AIDS. 2001; 15(4):461-6.
10. Masur H. Clinical studies of Pneumocystis carinii and relationships to AIDS. J Protozool. 1989; 36(1):70-4.
11. Peters BS, Beck EJ, Coleman DG, Wadsworth MJ, McGuinness O, Harris JR, et al. Changing disease patterns in patients with AIDS in a referral centre in the United Kingdom: the changing face of AIDS. BMJ. 1991; 302(6770):203-7.
12. Fisk DT, Meshnick S, Kazanjian PH. Pneumocystis carinii pneumonia in patients in the developing world who have acquired immunodeficiency syndrome. Clin Infect. 2003; 36(1):70-8.
13. Sheikholeslami MF, Sadraei J, Farnia P, Forozandeh Moghadam M, Emadikochak H. Rate of Pneumocystis pneumonia in Iranian HIV+ patients with pulmonary infiltrates. Jundishapur J Microbiol. 2013; 6(3):295-300.
14. Parian M, Fata A, Najafzadeh MJ, Rezaeitalab F. Molecular detection of Pneumocystis jirovecii using polymerase chain reaction in immunocompromised patients with pulmonary disorders in northeast of Iran. Curr Med Mycol. 2015; 1(2):13-8.
15. Aboualigalehdari E, Zarei Mahmoudabadi A, Fatahinia M, Idani E. The prevalence of Pneumocystis jirovecii among patients with different chronic pulmonary disorders in Ahvaz, Iran. Iran J Microbiol. 2015; 7(6):333-7.
16. Homayouni MM, Behniafar H, Mehbod AS, Mohammad-Sadeghi MJ, Maleki B. Prevalence of Pneumocystis jirovecii among immunocompromised patients in hospitals of Tehran city, Iran. J Parasit Dis. 2017; 41(3):850-3.
17. Jabbari Amiri MR, Abastabar M, Shokohi T, Aliali M, Saber S. Frequency of Pneumocystis jirovecii colonization in patients with respiratory failure using microscopic methods. J Mazandaran Univ Med Sci. 2015; 24(122):23-31.
18. Liu Y, Su L, Jiang SJ, Qu H. Risk factors for mortality from pneumocystis carinii pneumonia (PCP) in non-HIV patients: a meta-analysis. Oncotarget. 2017; 8(35):59729-39.
19. Tia T, Putaporntip C, Kosuwin R, Kongpolprom N, Kawkitinarong K, Jongwutiwes S. A highly sensitive novel PCR assay for detection of Pneumocystis jirovecii DNA in bronchoalveloar lavage specimens from immunocompromised patients. Clin Microbiol Infect. 2012; 18(6):598-603.
20. Wakefield AE, Pixley FJ, Banerji S, Sinclair K, Miller RF, Moxon ER, et al. Detection of Pneumocystis carinii with DNA amplification. Lancet. 1990; 336(8713):451-3.
21. Wakefield AE. DNA sequences identical to Pneumocystis carinii f. sp. carinii and Pneumocystis carinii f. sp. hominis in samples of air spora. J Clin Microbiol. 1996; 34(7):1754-9.
22. Fritzsche C, Riebold D, Munk-Hartig A, Klammt S, Neeck G, Reisinger E. High prevalence of Pneumocystis jirovecii colonization among patients with autoimmune inflammatory diseases and corticosteroid therapy. Scand J Rheumatol. 2012; 41(3):208-13.
23. Calderon EJ. Pneumocystis infection: seeing beyond the tip of the iceberg. Clin Infect Dis. 2010; 50(3):354-6.
24. Cushion MT. Are members of the fungal genus pneumocystis (a) commensals; (b) opportunists; (c) pathogens; or (d) all of the above? PLoS Pathog. 2010; 6(9):e1001009.
25. Morris A, Wei K, Afshar K, Huang L. Epidemiology and clinical significance of pneumocystis colonization. J Infect Dis. 2008; 197(1):10-7.
26. Gutierrez S, Respaldiza N, Campano E, Martinez-Risquez MT, Calderon EJ, De La Horra C. Pneumocystis jirovecii colonization in chronic pulmonary disease. Parasite. 2011; 18(2):121-6.
27. Medrano FJ, Montes-Cano M, Conde M, de la Horra C, Respaldiza N, Gasch A, et al. Pneumocystis jirovecii in general population. Emerg Infect Dis. 2005; 11(2):245-50.
28. Nevez G, Jounieaux V, Linas MD, Guyot K, Leophonte P, Massip P, et al. High frequency of Pneumocystis carinii sp.f. hominis colonization in HIV-negative patients. J Eukaryotic Microbiol. 1997; 44(6):36S.
29. Sing A, Roggenkamp A, Autenrieth IB, Heesemann J. Pneumocystis carinii carriage in immunocompetent patients with primary pulmonary disorders as detected by single or nested PCR. J Clin Microbiol. 1999; 37(10):3409-10.
30. Khalife S, Aliouat EM, Aliouat-Denis CM, Gantois N, Devos P, Mallat H, et al. First data on Pneumocystis jirovecii colonization in patients with respiratory diseases in North Lebanon. New Microbes New Infect. 2015; 6:11-4.
31. Ronit A, Klitbo DM, Kildemoes AO, Benfield T, Gerstoft J, Vestbo J, et al. Absence of Pneumocystis jirovecii colonization in human immunodeficiency virus-infected individuals with and without airway obstruction and with undetectable viral load. Open Forum Infect Dis. 2016; 3(1):ofw044.
32. Fauchier T, Hasseine L, Gari-Toussaint M, Casanova V, Marty PM, Pomares C. Detection of Pneumocystis jirovecii by quantitative PCR To differentiate colonization and pneumonia in immunocompromised HIV-positive and HIV-negative patients. J
Clin Microbiol. 2016; 54(6):1487-95.
33. Khodadadi H, Mirhendi H, Mohebali M, Kordbacheh P, Zarrinfar H, Makimura K. Pneumocystis jirovecii colonization in Non-HIV-infected patients based on nested-PCR detection in bronchoalveolar lavage samples. Iran J Public Health. 2013; 42(3):298-305.
34. Hunter JA, Wakefield AE. Genetic divergence at the mitochondrial small subunit ribosomal RNA gene among isolates of Pneumocystis carinii from five mammalian host species. J Eukaryot Microbiol. 1996; 43(5):24S-5S.
35. Morris A, Norris KA. Colonization by Pneumocystis jirovecii and its role in disease. Clin Microbiol Rev. 2012; 25(2):297-317.
36. Komano Y, Harigai M, Koike R, Sugiyama H, Ogawa J, Saito K, et al. Pneumocystis jiroveci pneumonia in patients with rheumatoid arthritis treated with infliximab: a retrospective review and case-control study of 21 patients. Arthritis Rheum. 2009; 61(3):305-12.
37. Vargas SL, Pizarro P, Lopez-Vieyra M, Neira-Aviles P, Bustamante R, Ponce CA. Pneumocystis colonization in older adults and diagnostic yield of single versus paired noninvasive respiratory sampling. Clini Infect Dis. 2010; 50(3):e19-21.
38. Nevez G, Raccurt C, Vincent P, Jounieaux V, Dei-Cas E. Pulmonary colonization with Pneumocystis carinii in human immunodeficiency virus-negative patients: assessing risk with blood CD4+ T cell counts. Clin Infect Dis. 1999; 29(5):1331-2.
39. Maruschke M, Riebold D, Holtfreter MC, Sombetzki M, Mitzner S, Loebermann M, et al. Pneumocystis pneumonia (PCP) and Pneumocystis jirovecii carriage in renal transplantation patients: a single-centre experience. Wien Klin Wochenschr. 2014; 126(23-24):762-6.
40. Sheikholeslami MF, Sadraei J, Farnia P, Forozandeh Moghadam M, Emadi Kochak H. Co-infection of Mycobacterium tuberculosis and Pneumocystis jirovecii in the Iranian patients with human immunodeficiency virus. Jundishapur J Microbiol. 2015; 8(2):e17254.
41. World Health Organization. Tuberculosis country profiles. Geneva: World Health Organization; 2016.
42. Sheikholeslami MF, Sadraei J, Farnia P, Forozandeh M, Emadi Kochak H, Tabarsi P, et al. Colonization of Pneumocystis jirovecii in chronic obstructive pulmonary disease (COPD) patients and the rate of Pneumocystis pneumonia in Iranian non-HIV(+) immunocompromised patients. Iran J Microbiol. 2013; 5(4):411-7.
43. Chen M, Tian X, Qin F, Zhou J, Liu J, Wang M, et al. Pneumocystis pneumonia in Patients with autoimmune diseases: a retrospective study focused on clinical characteristics and prognostic factors related to death. PloS One. 2015; 10(9):e0139144.
44. Bachelez H, Schremmer B, Cadranel J, Mouly F, Sarfati C, Agbalika F, et al. Fulminant Pneumocystis carinii pneumonia in 4 patients with dermatomyositis. Arch Intern Med. 1997; 157(13):1501-3.